How can I understand MATLAB code?

Take it slowly.. Since you don't know the coding, it will be difficult at the starting, don't give it up. 
Step1: Learn your algorithm (if mathematical equation is provided, learn it)
step2: simply go through the matlab code, if you don't understand, don't worry keep trying. finally you might understand the similarity in code and learned algorithm (mathematical equations ).
some matlab function might be new to you, search those in matlab help or try to run that function in matlab with  sample inputs.
700 line code means they might implemented as pieces of code (functions), In that case try to decode each function, understand .

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